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CodonCode Aligner Sequence Assembler 3.7.1
CodonCode Aligner Sequence Assembler 3.7.1 summary
License: Commercial
Price: $720
Platform: Mac OS X,Mac OS X 10.4,Mac OS X 10.5,Mac OS X 10.6, Windows7,Windows Vista Business,Windows Vista Bu
File size: 34.18 MB
Updated: 2010-11-03
Download: 3189
Publisher: CodonCode Corporation
Publisher URL: http://www.codoncode.com/
CodonCode Aligner Sequence Assembler 3.7.1 screenshot
CodonCode Aligner Sequence Assembler 3.7.1 description
CodonCode Aligner is user-friendly software for DNA sequence assembly, alignment, contig editing, and mutation detection. In addition to features common in sequence assembly programs like end clipping, alignments to reference sequences, cDNA to genomic DNA alignment, and exporting, CodonCode Aligner offers many unique features not found in other software.
Advanced CodonCode Aligner features include:
- Assemble by name: build hundreds of contigs in seconds, based on sample names
- Accurate consensus sequences based on sequence qualities eliminate the need to edit trivial discrepancies
- Contigs of contigs: align contigs to each other with ClustalW, and go back to the underlying traces with a simple double-click
- Automate with one-step processing and scripts
- Sensitive mutation analysis with unique tools for analyzing heterozygous insertions and deletions
- Use leading tools like Clustal, MUSCLE, Phred & Phrap within CodonCode Aligner
- Get a better look at your ABI sequences with CodonCode Aligner's trace sharpening
- Look at differences with the difference table and zooming in contigs
- Build Neighbor-Joining trees to sort your samples by differences
CodonCode Aligner is easy to learn and use, yet powerful and highly customizable. It includes extensive, context-sensitive help with "how to" instructions and explanations about the algorithms used. CodonCode Aligner is widely used in phylogenetics, evolution research, biogeography, mutation detection, and other biomedical research areas.
The download is a trial version that is fully functional for 30 days. It can be converted into a full version by purchasing a license. Licenses for CodonCode Aligner are substantially less expensive than licenses for comparable software packages. "Floating" licenses are available at no additional cost, and can be shared between Windows and Mac OS X.
Advanced CodonCode Aligner features include:
- Assemble by name: build hundreds of contigs in seconds, based on sample names
- Accurate consensus sequences based on sequence qualities eliminate the need to edit trivial discrepancies
- Contigs of contigs: align contigs to each other with ClustalW, and go back to the underlying traces with a simple double-click
- Automate with one-step processing and scripts
- Sensitive mutation analysis with unique tools for analyzing heterozygous insertions and deletions
- Use leading tools like Clustal, MUSCLE, Phred & Phrap within CodonCode Aligner
- Get a better look at your ABI sequences with CodonCode Aligner's trace sharpening
- Look at differences with the difference table and zooming in contigs
- Build Neighbor-Joining trees to sort your samples by differences
CodonCode Aligner is easy to learn and use, yet powerful and highly customizable. It includes extensive, context-sensitive help with "how to" instructions and explanations about the algorithms used. CodonCode Aligner is widely used in phylogenetics, evolution research, biogeography, mutation detection, and other biomedical research areas.
The download is a trial version that is fully functional for 30 days. It can be converted into a full version by purchasing a license. Licenses for CodonCode Aligner are substantially less expensive than licenses for comparable software packages. "Floating" licenses are available at no additional cost, and can be shared between Windows and Mac OS X.
Requirements: Windows 2000 or newer, Mac OS X 10.4 or newer
What's new in this version: New: Neighbor-Joining trees Zooming in alignments & assemblies Automatic reference sequence shortening after alignments Mask low coverage regions New and flexible consensus methods Set base numbers Automatic name scheme definitions for "Assemble & Align by Name" Customize toolbars directly through popup menus Rebuild the consensus See http://www.codoncode.com/aligner/new.htm
CodonCode Aligner Sequence Assembler 3.7.1 keywords
codoncode sequence contigs licenses codoncode aligner sequence assembly one step processing sequence qualities eliminate
CodonCode Aligner Sequence Assembler 3.7.1 for Developers
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CodonCode Aligner Sequence Assembler 3.7.1 Copyright
We periodically updates pricing and software information of CodonCode Aligner Sequence Assembler 3.7.1 full version from the publisher, so some information may be slightly out-of-date. You should confirm all information before relying on it. Software piracy is theft, Using crack, password, serial numbers, registration codes, key generators is illegal and prevent future development of CodonCode Aligner Sequence Assembler 3.7.1 Edition. Download links are directly from our mirror sites or publisher sites, torrent files or links from rapidshare, megaupload, torrent sites, mediafire, easyshare, 4shared, badongo, box.net, divshare, filefactory, ifile, ifolder, megashare, sendspace are not allowed
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